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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
08/03/2023 |
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Actualizado : |
15/03/2023 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
RAMOS, Z.; GARRICK , D. J.; BLAIR, H. T.; VERA, B.; CIAPPESONI, G.; KENYON, P. R. |
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Afiliación : |
ZULLY MARGOT RAMOS ALVEZ, School of Agriculture and Environment, Massey University, Palmerston North 4410, New Zealand; DORIAN J. GARRICK, School of Agriculture and Environment, Massey University, Palmerston North 4410, New Zealand; HUGH T. BLAIR, School of Agriculture and Environment, Massey University, Palmerston North 4410, New Zealand; BRENDA VERA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CARLOS GABRIEL CIAPPESONI SCARONE, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; PAUL R. KENYON, School of Agriculture and Environment, Massey University, Palmerston North 4410, New Zealand. |
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Título : |
Genomic regions associated with wool, growth and reproduction traits in Uruguayan Merino Sheep. |
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Fecha de publicación : |
2023 |
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Fuente / Imprenta : |
Genes, 2023, volume 14, issue 1, article 167. OPEN ACCESS. doi: https://doi.org/10.3390/genes14010167 |
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ISSN : |
2073-4425 |
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DOI : |
10.3390/genes14010167 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 13 December 2022; Revised 29 December 2022; Accepted 4 January 2023; Published 7 January 2023. -- Correspondence author: Zully Ramos, email: z.ramosalvez@massey.ac.nz -- Academic Editor: Qiuyue Liu -- This article belongs to the Section Animal Genetics and Genomics (https://www.mdpi.com/journal/genes/sections/Animal_Genetics_Genomics ) -- FUNDING: his research was funded by the Regional Consortium for Innovation in Ultrafine Wool (CRILU), the European Union?s Horizon 2020 research and innovation program under the grant agreement n°772787 (Smarter) and the National Institute of Agricultural Research of Uruguay (INIA_CL_38: Rumiar). This study was supported by two Ph.D. scholarships (from the National Agency for Investigation and Innovation of Uruguay, ANII, and Massey University, New Zealand), awarded to Zully Ramos. -- LICENSSE: Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). --
Supplementary Materials The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/genes14010167/s1, Table S1: Enrichment analysis. |
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Contenido : |
The aim of this study was to identify genomic regions and genes associated with the fiber diameter (FD), clean fleece weight (CFW), live weight (LW), body condition score (BCS), pregnancy rate (PR) and lambing potential (LP) of Uruguayan Merino sheep. Phenotypic records of approximately 2000 mixed-age ewes were obtained from a Merino nucleus flock. Genome-wide association studies were performed utilizing single-step Bayesian analysis. For wool traits, a total of 35 genomic windows surpassed the significance threshold (PVE > 0.25%). The proportion of the total additive genetic variance explained by those windows was 4.85 and 9.06% for FD and CFW, respectively. There were 42 windows significantly associated with LWM, which collectively explained 43.2% of the additive genetic variance. For BCS, 22 relevant windows accounted for more than 40% of the additive genetic variance, whereas for the reproduction traits, 53 genomic windows (24 and 29 for PR and LP, respectively) reached the suggestive threshold of 0.25% of the PVE. Within the top 10 windows for each trait, we identified several genes showing potential associations with the wool (e.g., IGF-1, TGFB2R, PRKCA), live weight (e.g., CAST, LAP3, MED28, HERC6), body condition score (e.g., CDH10, TMC2, SIRPA, CPXM1) or reproduction traits (e.g., ADCY1, LEPR, GHR, LPAR2) of the mixed-age ewes. Copyright: © 2023 by the authors |
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Palabras claves : |
Body condition score; Fiber diameter; Gene; GWAS; Reproduction; Sheep. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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URL : |
https://www.mdpi.com/2073-4425/14/1/167/pdf
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Marc : |
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100 1 $aRAMOS, Z.
245 $aGenomic regions associated with wool, growth and reproduction traits in Uruguayan Merino Sheep.$h[electronic resource]
260 $c2023
500 $aArticle history: Received 13 December 2022; Revised 29 December 2022; Accepted 4 January 2023; Published 7 January 2023. -- Correspondence author: Zully Ramos, email: z.ramosalvez@massey.ac.nz -- Academic Editor: Qiuyue Liu -- This article belongs to the Section Animal Genetics and Genomics (https://www.mdpi.com/journal/genes/sections/Animal_Genetics_Genomics ) -- FUNDING: his research was funded by the Regional Consortium for Innovation in Ultrafine Wool (CRILU), the European Union?s Horizon 2020 research and innovation program under the grant agreement n°772787 (Smarter) and the National Institute of Agricultural Research of Uruguay (INIA_CL_38: Rumiar). This study was supported by two Ph.D. scholarships (from the National Agency for Investigation and Innovation of Uruguay, ANII, and Massey University, New Zealand), awarded to Zully Ramos. -- LICENSSE: Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). -- Supplementary Materials The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/genes14010167/s1, Table S1: Enrichment analysis.
520 $aThe aim of this study was to identify genomic regions and genes associated with the fiber diameter (FD), clean fleece weight (CFW), live weight (LW), body condition score (BCS), pregnancy rate (PR) and lambing potential (LP) of Uruguayan Merino sheep. Phenotypic records of approximately 2000 mixed-age ewes were obtained from a Merino nucleus flock. Genome-wide association studies were performed utilizing single-step Bayesian analysis. For wool traits, a total of 35 genomic windows surpassed the significance threshold (PVE > 0.25%). The proportion of the total additive genetic variance explained by those windows was 4.85 and 9.06% for FD and CFW, respectively. There were 42 windows significantly associated with LWM, which collectively explained 43.2% of the additive genetic variance. For BCS, 22 relevant windows accounted for more than 40% of the additive genetic variance, whereas for the reproduction traits, 53 genomic windows (24 and 29 for PR and LP, respectively) reached the suggestive threshold of 0.25% of the PVE. Within the top 10 windows for each trait, we identified several genes showing potential associations with the wool (e.g., IGF-1, TGFB2R, PRKCA), live weight (e.g., CAST, LAP3, MED28, HERC6), body condition score (e.g., CDH10, TMC2, SIRPA, CPXM1) or reproduction traits (e.g., ADCY1, LEPR, GHR, LPAR2) of the mixed-age ewes. Copyright: © 2023 by the authors
653 $aBody condition score
653 $aFiber diameter
653 $aGene
653 $aGWAS
653 $aReproduction
653 $aSheep
700 1 $aGARRICK , D. J.
700 1 $aBLAIR, H. T.
700 1 $aVERA, B.
700 1 $aCIAPPESONI, G.
700 1 $aKENYON, P. R.
773 $tGenes, 2023, volume 14, issue 1, article 167. OPEN ACCESS. doi: https://doi.org/10.3390/genes14010167
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INIA Las Brujas (LB) |
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| Registros recuperados : 19 | |
| 4. |  | CARRACELAS, B.; NAVAJAS, E.; VERA, B.; CIAPPESONI, G. Estudio de asociación de genoma completo para resistencia genética a nematodos gastrointestinales en ovinos Corriedale. [abstract]. In: AUPA, Proceedings del VII Congreso Uruguayo de Producción Animal. Sección Una Sola Salud (Single Health Section), 14 y 15 diciembre 2021. Archivos Latinoamericanos de Producción Animal, 29(Supl.1), p.96. (Archivos Latinoamericanos de Producción Animal, Vol.29, Supl.1) Corresponding author: B. Carracelas, Instituto Nacional de Investigación Agropecuaria (INIA), Ruta 48 Km 10, Las Brujas, Uruguay, mailto: bcarracelas@inia.org.uy| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 6. | | CARRACELAS, B.; NAVAJAS, E.; VERA, B.; CIAPPESONI, G. SNP arrays evaluation as tools in genetic improvement in Corriedale sheep in Uruguay. [Evaluación de paneles de SNP como herramientas en la mejora genética de ovinos Corriedale en Uruguay]. [Avaliação de painéis de SNP como ferramentas em melhoramento genético de ovinos Corriedale no Uruguai]. Animal production and pastures. Agrociencia Uruguay, 2022, vol. 26, number 2, article e998. doi: https://doi.org/10.31285/AGRO.26.998 Article history: Received 09 Feb 2022; Accepted 30 May 2022; Published 19 Aug 2022. Editor: Mariana Carriquiry, Universidad de la República, Facultad de Agronomía, Montevideo, Uruguay. Correspondence: Beatriz Carracelas,...| Tipo: Artículos en Revistas Indexadas Nacionales | Circulación / Nivel : Nacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 8. | | VERA, B.; NAVAJAS, E.; DE BARBIERI, I.; VAN LIER, E.; CIAPPESONI, G. Agroecological breeding: genomic evaluation in Australian Merico. [abstract]. In: REDBIO México 2022, XI Congreso, "Biotecnología productiva y sostenible". Libro de resúmenes. 12-14 octubre 2022, Yucatán, México. p.29 This project received funding from SMARTER Horizon 2020 number 772787, RUMIAR, CSIC I+D-2018-287.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 9. | | VERA, B.; DE BARBIERI, I.; FERREIRA, G.; NAVAJAS, E.; CARRACELAS, B.; CIAPPESONI, G. Asignación de parentesco y detección de superfecundación heteropaternal en ovinos Merino Australiano mediante paneles de SNP. In: AUPA, Proceedings del VII Congreso Uruguayo de Producción Animal. Sección Cambio Climático y Producción Sostenible (Climate Change Section), 14 y 15 diciembre 2021. Archivos Latinoamericanos de Producción Animal, 29(Supl.1), p.85-87. (Archivos Latinoamericanos de Producción Animal, Vol.29, Supl.1) Corresponding author: B. Vera, Instituto Nacional de Investigación Agropecuaria (INIA), Ruta 48 km 10, Las Brujas (Uruguay), mailto: bvera@inia.org.uy| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 12. | | RAMOS, Z.; GARRICK , D. J.; BLAIR, H. T.; VERA, B.; CIAPPESONI, G.; KENYON, P. R. Genomic regions associated with wool, growth and reproduction traits in Uruguayan Merino Sheep. Genes, 2023, volume 14, issue 1, article 167. OPEN ACCESS. doi: https://doi.org/10.3390/genes14010167 Article history: Received 13 December 2022; Revised 29 December 2022; Accepted 4 January 2023; Published 7 January 2023. -- Correspondence author: Zully Ramos, email: z.ramosalvez@massey.ac.nz -- Academic Editor: Qiuyue Liu -- This...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 14. | | BLUMETTO, O.; DE BARBIERI, I.; NAVAJAS, E.; BAETHGEN, W.; VERA, B.; BECOÑA, G.; CIAPPESONI, G. Regenerative livestock farming in Uruguay. Montevideo (UY): INIA, 2023. 23 p. (INIA, Special Edition). Technical review: Ing. Agr. PhD Verónica Ciganda y DMV PhD Georgget Banchero. -- This publication derives from the research work of the Natural Resources, Production and Environment Area, within the framework of the Extensive Livestock...| Tipo: Ediciones Especiales |
| Biblioteca(s): INIA Las Brujas. |
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| 15. | | VERA, B.; NAVAJAS, E.; DE BARBIERI, I.; VAN LIER, E.; CIAPPESONI, G. Predicciones genómicas para rasgos productivos y de valor ambiental en ovinos Merino Australiano. [resumen]. In: REDBIO México 2022, XI Congreso, "Biotecnología productiva y sostenible". Libro de resúmenes. 12-14 octubre 2022, Yucatán, México. p.122. Este trabajo fue parcialmente financiado por los proyectos SMARTER (772787), RUMIAR, GrassToGas, CSIC I+D-2018-287.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 16. | | VERA, B.; MONZALVO, C.; NAVAJAS, E.; DE BARBIERI, I.; CARRACELAS, B.; VAN LIER, E.; CIAPPESONI, G. Predicción del valor genético de ovinos en predios comerciales para emisión de metano, eficiencia de conversión y características productivas. Revista INIA Uruguay, Diciembre 2022, no.71, p. 34-37. (Revista INIA; 71)| Tipo: Artículos en Revistas Agropecuarias |
| Biblioteca(s): INIA Treinta y Tres. |
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| 17. | | CIAPPESONI, G.; DE BARBIERI, I.; MONTOSSI, F.; RAMOS, Z.; GIMENO, D.; VERA, B.; GIONANNINI, N. PL-3 Pass, present and future of Merino in Argentina and Uruguay. [conference abstract]. Animal - science proceedings, March 2023, Volume 14, Issue 1, Pages 3-5. doi: https://doi.org/10.1016/j.anscip.2023.01.004 Article history: Available online 13 March 2023, Version of Record 13 March 2023. -- Corresponding author: Gabriel Ciappesoni Scarone. E-mail: gciappesoni@inia.org.uy --
Animal - science proceedings Volume 14, Contents: 10th...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 18. | | CIAPPESONI, G.; MARQUES, C. B.; NAVAJAS, E.; PERAZA, P.; CARRACELAS, B.; VERA, B.; VAN LIER, E.; DE BARBIERI, I.; SALADA, S.; MONZALVO, C.; CASTELLS, D. Breeding for sheep parasite resistance in extensive production systems in Uruguay: From phenotype to genotype. Advances in biotechnologies for improving livestock breeding and feeding. In: Viljoen, G., Garcia Podesta, M. & Boettcher, P. (eds). 2023. International Symposium on Sustainable Animal Production and Health - Current status and way forward. Vienna, Austria, 28 June to 2 July 2021. Rome, FAO. Pp.224-236. https://doi.org/978-92-5-137052-0| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Las Brujas. |
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| 19. | | NAVAJAS, E.; RAVAGNOLO, O.; DE BARBIERI, I.; PRAVIA, M.I.; AGUILAR, I.; LEMA, O.M.; VERA, B.; PERAZA, P.; MARQUES, C. B.; VELAZCO, J.I.; CIAPPESONI, G. Genetic selection of feed efficiency and methane emissions in sheep and cattle in Uruguay: progress and limitations. [29] Part 5 - Novel traits: environment and greenhouse gas- In: Proceedings of the World Congress on Genetics Applied to Livestock Production (WCGALP), 12., Rotterdam, the Netherlands, 3-8 July 2022. doi: https://doi.org/10.3920/978-90-8686-940-4_29 164-167. Article history: Published online: February 9, 2023. -- Corresponding author: E.A. Navajas, email: enavajas@inia.org.uy -- Acknowledgements: The authors acknowledge the funding organizations INIA, Agencia Nacional de Investigación e...| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| Registros recuperados : 19 | |
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